- “A Design Methodology for Ships and Other Complex Systems”, P. Mandel, C. Chryssostomidis, Philosophical Transactions of the Royal Society of London, A, 273: 85-98, 1972.
- “Seakeeping Standard Series for Cruiser-Stern Ships”, T. A. Loukakis, C. Chryssostomidis, SNAME Transactions, 83: 67-127, 1975.
- “Analytic Determination of the Buckling Speed of Towed Slender Cylindrical Beams”, G. S. Triantafyllou, C. Chryssostomidis, ASME Transactions, Journal of Energy Resources Technology, 106: 246-249, 1984.
- “Vortex Induced Response of a Flexible Cylinder in a Constant Current”, N. M. Patrikalakis, C. Chryssostomidis, ASME Transactions, Journal of Energy Resources Technology, 107: 224-249, 1985.
- “Vortex Induced Response of a Flexible Cylinder in a Sheared Current”, N. M. Patrikalakis, C. Chryssostomidis, ASME Transactions, Journal of Energy Resources Technology, 108: 59-64, 1986.
- “On the Formation of Vortex Streets Behind Stationary Cylinders”, G. S. Triantafyllou, M. S. Triantafyllou, C. Chryssostomidis, Journal of Fluid Mechanics, 170: 461-477, 1986.
- “Stability Analysis to Predict Vortex Street Characteristics and Forces on Circular Cylinders”, G. S. Triantafyllou, M. S. Triantafyllou, C. Chryssostomidis, ASME Transactions, Journal of Offshore Mechanics and Arctic Engineering, 109: 148-154, 1987.
- “Geometric Modeling Issues in Computer Aided Design of Marine Structures” C. Chryssostomidis, N. M. Patrikalakis, Marine Technology Society Journal, 22: 15-33, 1988.
- “The Dynamics of Towed Arrays”, G. S. Triantafyllou, C. Chryssostomidis. ASME Transactions, Journal of Offshore Mechanics and Arctic Engineering, 111, 1989.
- “Buckling Analysis of Sandwich Shell Structures Subjected to Hydrostatic Load”, C. Chryssostomidis, N. Papadakis, SNAME, Marine Technology Journal, 1992.
- “Inspection and Feature Extraction of Marine Propellers”, R. A. Jinkerson, S. L. Abrams, L. Bardis, C. Chryssostomidis, A. Clement, N. M. Patrikalakis, F. – E. Wolter. SNAME, Journal of Ship Production, 9 (2): 88-106, 1993.
- “Economic Ocean Survey Capability with AUVs”, J. G. Bellingham, C. Chryssostomidis, Sea Technology Journal, pp. 12-18, April 1993.
- “The Geometric Modeling and Interrogation System Praxiteles”, S. L. Abrams, L. Bardis, C. Chryssostomidis, N. M. Patrikalakis, S. T. Tuohy, F. – E. Wolter, J. Zhou, SNAME, Journal of Ship Production, 11 (2): 117-132, 1995.
- “Map Based Navigation for Autonomous Underwater Vehicles”, S. T. Tuohy, J. J. Leonard, J. G. Bellingham, N. M. Patrikalakis, C. Chryssostomidis, International Journal of Offshore and Polar Engineering, 6 (1): 9-18, 1996.
- “Curved Shape Reconstruction Using Multiple Hypothesis Tracking”, B. A. Moran, J. J. Leonard, and C. Chryssostomidis, IEEE Journal of Oceanic Engineering, 1997.
- “System Identification of Open-Loop Maneuvers Leads to Improved AUV Flight Performance”, M. E. Rentschler, F. S. Hover, C. Chryssostomidis. IEEE Journal of Oceanic Engineering. 31 (1), 2006.
- “Sensitivity Analysis of the Shipboard Integrated Power System”, P. Prempraneerach, F. S. Hover, M. S. Triantafyllou, T. J. McCoy, C. Chryssostomidis, G. E. Karniadakis, ASNE Naval Engineers Journal, 12, article 25, 2007.
- “Sensitivity Analysis of the Shipboard Integrated Power System”, P. Prempraneerach, F. S. Hover, M. S. Triantafyllou, T. J. McCoy, C. Chryssostomidis and G. E. Karniadakis, ASNE Naval Engineers Journal, 120 (1): 109-121, 2008.
- “Efficient Sensor Placement for Ocean Measurements using Low-Dimensional Concepts”, B. Yildirim, C. Chryssostomidis, G. E. Karniadakis, Ocean Modeling Journal, 27 (3-4): 160-173, 2009.
- “Sea Perch—Connecting Students, Scientists, and Oceans Around the World through Underwater Robotics”, B. M. M. Wilbur, C. Chryssostomidis, N. Adams. Journal of Marine Education, 25 (2): 25-28, 2009.
- “EOF-based Constrained Sensor Placement and Field Reconstruction from Noisy Ocean Measurements: Application to Nantucket Sound”, X. Yang, D. Venturi, C. Chen, C. Chryssostomidis, G. Karniadakis. Journal of Geophysical Research, 115, C12072, 2010.
- “Stochastic Sensitivity Methods Applied to Shipboard Power Systems”, P. Prempraneerach, F. S. Hover, M. S. Triantafyllou, C. Chryssostomidis, G. E. Karniadakis, IEEE Transactions on Power Systems, 2010.
- “STEM Education through Open Hardware at MIT Sea Grant”, R. VanCott, B. M. Wilbur, C. Chryssostomidis, M. Soroka, K. Shroyer, Invited Paper in Open Hardware Journal, November 2011.
- “Notional All-Electric Ship Systems Integration Thermal Simulation and Visualization”, J. V. C. Vargas, J. A. Souza, R. Hovsapian, J. C. Ordonez, T. R. Chiocchio, J.S. Chalfant, C. Chryssostomidis, E. Dilay, Simulation: Transactions of the Society for Modeling and Simulation International, 88 (9): 1116-1128, Sept. 2012.
- “The Experimental Validation of a Transient Power Electronic Building Block (PEBB) Mathematical Model”, E. Dilay, J. V. C. Vargas, J. C. Ordonez, S. Yang, R. Schrattenecker, M. P. Coleman, T. R. Chiocchio, J. S. Chalfant, C. Chryssostomidis, Applied Thermal Engineering. 60 (1-2): 411-422, Oct. 2013.
- “A Robust and Accurate Outflow Boundary Condition for Incompressible Flow Simulations on Severely-Truncated Unbounded Domains”, S. Dong, G. Em. Karniadakis, C. Chryssostomidis. Journal of Computational Physics, 261: 83-105, 2014.
- “A Phase-Field Method for 3D Simulation of Two-Phase Heat Transfer”, X. Zheng, H. Babaee, S. Dong, C. Chryssostomidis, G. E. Karniadakis. International Journal of Heat and Mass Transfer. 82: 282-298, 2015.
- “A Method for Propeller Blade Optimization and Cavitation Inception Mitigation”, B. Epps, O. Víquez, C. Chryssostomidis, Journal of Ship Production and Design, 31, 2(12): 88-99, 2015.
- “Multi-fidelity Modeling of Mixed Convection Based on Experimental Correlations and Numerical Simulations”, H. Babaee, P. Perdikaris, C. Chryssostomidis, G. Em. Karniadakis, Journal of Fluid Mechanics, 809: 895-917, Dec. 2016.
- “Mathematical Formulation and Demonstration of a Dynamic System-Level Ship Thermal Management Tool”, S. Yang, J. C. Ordonez, J. V. C. Vargas, J. S. Chalfant, C. Chryssostomidis, Advances in Engineering Software, 100: 1-18, 2016.
- “Influence of Large Hull Deformations on the Motion Response of a Fast Catamaran Craft with Varying Stiffness”, J. del Águila Ferrandis, S. Brizzolara, C. Chryssostomidis, Ocean Engineering, 163: 207-222, 2018.
- “Learning Functionals via LSTM Neural Networks for Predicting Vessel Dynamics in Extreme Sea States”, J. del Águila Ferrandis, M. Triantafyllou, C. Chryssostomidis, G. Karniadakis. Preprint, arXiv preprint arXiv:1912.13382